Group

The goals of our group are to uncover the mechanisms underlying epigenetic regulation in humans and animals and to identify the role of these mechanisms in cell differentiation and aging. The project topics cover novel data analysis algorithms, effective Next Generation Sequencing data processing tools, scalable computational pipelines, visualization approaches, and meta-analysis of existing epigenomic databases.

The group is based at JetBrains. Contact person: Oleg Shpynov.

Projects

Tools

Source code

All the source code is available on GitHub.

Materials

Various presentations including journal club and talks are here.

Student Internship

News

More posts

Publications

  • O. Shpynov, A. Dievskii, P. Tsurinov, et al
    Bioinformatics Institute 2018/19 project abstracts
    Saint-Petersburg, ISBN 978-5-6043094-2-1,
  • Jeremy P. Huynh, Chih-Chung Lin, Jacqueline M. Kimmey, Nicholas N. Jarjour, Elizabeth A. Schwarzkopf, Tara R. Bradstreet, Irina Shchukina, Oleg Shpynov, Casey T. Weaver, Reshma Taneja, Maxim N. Artyomov, Brian T. Edelson, Christina L. Stallings
    Journal of Experimental Medicine,