Materials

Publications what-where-when

July 11, 2020

Oleg Shpynov

Publications what-where-when

Snakemake advanced tutorial

May 6, 2020

Roman Chernyatchik

Snakemake advanced tutorial

ChIP-seq analysis: from histones to bioinformatics (in Russian)

February 20, 2020

Oleg Shpynov

ChIP-seq analysis: from histones to bioinformatics

Epigenetic regulation

February 13, 2020

Oleg Shpynov, Roman Chernyatchik

ChromHMM and DNA methylation

Regulation of transcription

Mathematics in Biology

February 5, 2020

Oleg Shpynov

Mathematics in Biology

57-fold Throughput Increase and Other Incredible Stories of Native Optimization

December 10, 2019

Alexei Dievskii

57-fold Throughput Increase and Other Incredible Stories of Native Optimization

ChIP-Seq processing with snakemake

August 1, 2019

Roman Chernyatchik

ChIP-Seq processing with snakemake

Epigenetic regulation and aging

July 31, 2019

Oleg Shpynov

Epigenetic regulation and aging

Causal Inference Review

June 27, 2019

Oleg Shpynov

Causal Inference Review

Snakemake Workshop

May 29, 2019

Alexei Dievskii

Snakemake Workshop

Introduction to DNA Methylation

April 24, 2019

Roman Chernyatchik

Introduction to DNA Methylation

Epigenetics analysis practice

April 23, 2019

Oleg Shpynov, Roman Chernyatchik

Epigenetics analysis practice

Single cell ATAC-Seq processing review

January 16, 2019

Alexey Dievsky

Single cell ATAC-Seq processing review

Snakemake Overview

January 14, 2019

Alexei Dievskii

Snakemake Overview

NeurIPS 2018 summary

December 19, 2018

Oleg Shpynov

NeurIPS 2018 summary

Biata2018 summary

July 30, 2018

Petr Tsurinov

Biata2018 summary slides

Talk at Bioinformatics Institute Summer School 2018

July 28, 2018

Oleg Shpynov

ChIP-Seq - method for studying epigenetic mechanisms

Talk at JetBrains internal conference

April 13, 2018

Oleg Shpynov

JetBrains Research and Aging Studies - What's This All About?

Rule mining and information theory

November 16, 2016

Oleg Shpynov

RM and information

Pipeline for epigenomic profiling of several histone marks in aging monocytes

October 20, 2016

Oleg Shpynov

Pipeline for epigenomic profiling of several histone marks in aging monocytes

Tensor Methods in Machine Learning

June 6, 2016

Evgeny Kurbatsky

Tensor Methods in Machine Learning

Rule mining and counter examples

April 13, 2016

Oleg Shpynov

Rule mining and counter examples

Predicting TSS using Deep Learning

April 6, 2016

Evgeny Kurbatsky

Predicting TSS using Deep Learning

NIPS 2015

January 12, 2016

Evgeny Kurbastky

NIPS 2015

Talk at Bioinformatics Institute

November 11, 2015

Oleg Shpynov

Talk at Bioinformatics Institute

RuleMining2

September 30, 2015

Oleg Shpynov

RuleMining2

Models comparison

September 25, 2015

Evgeny Kurbastky

Models comparison

Talk at Almazov center

July 22, 2015

Oleg Shpynov

Talk at Almazov center

Rule Mininig Applications

March 20, 2015

Oleg Shpynov

Rule Mininig Applications

Mathematical methods compendium

March 18, 2015

Alexei Dievsky

Mathematical methods compendium

Rule Mininig

November 19, 2014

Oleg Shpynov

Rule Mininig

Small RNAs. Micro RNA mechanism review

October 31, 2014

Roman Cherniatchik

Small RNAs. Micro RNA mechanism review.

Review on epigenetics and differentiation

October 29, 2014

Oleg Shpynov

Review on epigenetics and differentiation

NMF applications for ChIPSeq data. Updated

September 1, 2014

Oleg Shpynov

NMF applications for ChIPSeq data. Updated

Bins

August 27, 2014

Anna Atamanova

Bins

NMF applications for ChIPSeq data

July 17, 2014

Oleg Shpynov

NMF applications for ChIPSeq data

RNA-Seq Bias Correction

April 10, 2014

Roman Cherniatchik

RNA-Seq Bias Correction

RNA-Seq Differential Expression methods evolution

February 27, 2014

Roman Cherniatchik

RNA-Seq Differential Expression methods evolution

Discovery and characterization of chromatin states for systematic annotation of the human genome

February 12, 2014

Oleg Shpynov

Discovery and characterization of chromatin states for systematic annotation of the human genome

Chip-Seq analysis

January 31, 2014

Evgeny Kurbastky

Chip-Seq analysis

Locus-specific editing of histone modifications at endogenous enhancers

January 22, 2014

Oleg Shpynov

Locus-specific editing of histone modifications at endogenous enhancers

Epigenetic editing

December 11, 2013

Oleg Shpynov

Epigenetic editing

Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage

November 29, 2013

Evgeny Kurbastky

Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage

IMB Topics #2

November 22, 2013

Oleg Shpynov

IMB Topics #2

Cufflinks

November 13, 2013

Evgeny Kurbatsky

Cufflinks

IMB Topics: Regulation of the Stem Cell State

November 6, 2013

Roman Chernyatchik

IMB Topics: Regulation of the Stem Cell State

Information criteria

October 28, 2013

Alexey Dievsky

Information criteria

DNA Methylation Models

October 23, 2013

Sergei Lebedev

DNA Methylation Models (in Russian)

Bayesian Networks

October 14, 2013

Alexey Dievsky

Bayesian Networks

Yandex School of Data Analysis

October 7, 2013

Oleg Shpynov

Yandex School of Data Analysis

Dynamic Regulation of Nucleosome Positioning in the Human Genome

April 4, 2013

Roman Cherniatchik

Dynamic Regulation of Nucleosome Positioning in the Human Genome

DNA methylation effect on co-transcriptional splicing is dependent on GC-architecture of the exon-intron structure

April 2, 2013

Roman Chernyatchik

DNA methylation effect on co-transcriptional splicing is dependent on GC-architecture of the exon-intron structure

JetPoint Meeting

March 6, 2013

Oleg Shpynov

JetPoint Meeting (in Russian)