SPAN Semisupervised Peak Analyzer
We propose a novel semi-supervised approach to peak calling.
Fast and effective semi-supervised peaks analyzer SPAN Peak Analyzer is a multipurpose peak caller capable processing both conventional and ULI-Chip-seq tracks. In the semi-supervised approach, user annotates a handful of locations as peaks, valleys or peak shores, and then uses these annotations to train the model that is optimal for a given sample.
See a detailed description here.