BioLabs
Publications
SPAN and JBR: analysis and visualization toolkit for peak calling
August 2021
Oleg Shpynov , Roman Chernyatchik, Petr Tsurinov, Maxim Artyomov
PubTrends: a scientific literature explorer
August 2021
Oleg Shpynov, Kapralov Nikolai
FARM: hierarchical association rule mining and visualization method
August 2021
Petr Tsurinov, Oleg Shpynov, Nina Lukashina, Daria Likholetova, Maxim Artyomov
Cellular and plasma proteomic determinants of COVID-19 and non-COVID-19 pulmonary diseases relative to healthy aging
May 2021
Laura Arthur, Ekaterina Esaulova, Denis A. Mogilenko, Petr Tsurinov, Samantha Burdess, Anwesha Laha, Rachel Presti, Brian Goetz, Mark A. Watson, Charles W. Goss, Christina A. Gurnett, Philip A. Mudd, Courtney Beers, Jane A. O’Halloran & Maxim N. Artyomov
Semi-supervised peak calling with SPAN and JBR Genome Browser
May 2021
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Petr Tsurinov, Maxim N Artyomov
Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging
December 2020
Denis A. Mogilenko, Oleg Shpynov, Prabhakar Sairam Andhey, Laura Arthur, Amanda Swain, Ekaterina Esaulova, Simone Brioschi, Irina Shchukina, Martina Kerndl, Monika Bambouskova, Zhangting Yao, Anwesha Laha, Konstantin Zaitsev, Samantha Burdess, Susan Gillfilan, Sheila A. Stewart, Marco Colonna, Maxim N.Artyomov
Automatic generation of reviews of scientific papers
December 2020
Anna Nikiforovskaya, Nikolai Kapralov, Anna Vlasova, Oleg Shpynov, Aleksei Shpilman
Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome
November 2020
Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov
Epigenetic aging of classical monocytes from healthy individuals
May 2020
Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov
Bioinformatics Institute 2018/19 project abstracts
June 2019
O. Shpynov, A. Dievskii, P. Tsurinov, et al
GENOMIC DATA ACCESS SERVICE
2019
Kalinin Vladislav Il'ich, Cherniatchik Roman Igorevich
POSTER: Semi-supervised solution for robust peak calling of Low Input ChIP-Seq
September 2018
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov
POSTER: Semi-supervised solution for peak calling
July 2018
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov
Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection
May 2018
Jeremy P. Huynh, Chih-Chung Lin, Jacqueline M. Kimmey, Nicholas N. Jarjour, Elizabeth A. Schwarzkopf, Tara R. Bradstreet, Irina Shchukina, Oleg Shpynov, Casey T. Weaver, Reshma Taneja, Maxim N. Artyomov, Brian T. Edelson, Christina L. Stallings
POSTER: Systems Level Characterization of the Epigenomic Changes During Healthy Aging in the Human Blood Monocyte
October 2016
Bagaitkar Juhi, Bambouskova Monica, Oltz Eugene, Porter Sofia, Collins Patrick, Shpynov Oleg, German Demidov, Konstantin Zaytsev
POSTER: Detecting differential histone modification sites from ChIP-seq data via ranking
November 2014
Evgenii Kurbatckii
POSTER: A switching hidden Markov model for bisulfite sequencing
November 2014
Sergei Lebedev, Dmitry Groshev