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Snakemake advanced tutorial

Roman Chernyatchik presented advanced tutorial on Snakemake for ITMO master students.

Covered topics:

  • Pipelines
  • Execution steps, DAGs, dependencies lookup
  • Advanced rules sections
  • Lambda functions
  • Wildcards
  • Dynamic dependencies
  • Checkpoints
  • Wrappers
  • Launching on computational clusters
  • Examples

https://research.jetbrains.org/files/material/5ec2...