Roman Cherniatchik

Roman Cherniatchik


Research Groups

Biography

Graduated from the St. Petersburg State University, Mathematics and Mechanics Faculty, Software Engineering Department. In 2012, Roman completed a year-long course in Bioinformatics at the St Petersburg Academic University.

2012 – to date Researcher at the BioLabs. Studying epigenetic processes in humans, particularly mechanisms of methylation/demethylation and their relation to non-coding RNA and histone modifications.

2006 – 2012 Co-founder of RubyMine. Also participated in several other JetBrains projects, incl. IntelliJ IDEA and TeamCity.

2005 – 2006 Developer at the Apache Harmony.

2005 – 2008 Participated in various projects related to Domain-Specific Languages and Visual Modeling.

Professional Activity

Participant of numerous Ruby on Rails conferences.

Publications

SPAN and JBR: analysis and visualization toolkit for peak calling

August 2021

Oleg Shpynov , Roman Chernyatchik, Petr Tsurinov, Maxim Artyomov

BCB '21: Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, Article No.: 69, Pages 1

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Semi-supervised peak calling with SPAN and JBR Genome Browser

May 2021

Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Petr Tsurinov, Maxim N Artyomov

Bioinformatics, btab376

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Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome

November 2020

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov

Nature Aging

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Epigenetic aging of classical monocytes from healthy individuals

May 2020

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov

bioRxiv preprint

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GENOMIC DATA ACCESS SERVICE

2019

Kalinin Vladislav Il'ich, Cherniatchik Roman Igorevich

ПРОЦЕССЫ УПРАВЛЕНИЯ И УСТОЙЧИВОСТЬ

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POSTER: Semi-supervised solution for robust peak calling of Low Input ChIP-Seq

September 2018

Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov

Proceedings of the 17th European conference on computational biology

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POSTER: Semi-supervised solution for peak calling

July 2018

Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov

Proceedings of Biata2018 Bioinformatics: from algorithms to applications

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