Roman Cherniatchik
Research Groups
Biography
Graduated from the St. Petersburg State University, Mathematics and Mechanics Faculty, Software Engineering Department. In 2012, Roman completed a year-long course in Bioinformatics at the St Petersburg Academic University.
2012 – to date Researcher at the BioLabs. Studying epigenetic processes in humans, particularly mechanisms of methylation/demethylation and their relation to non-coding RNA and histone modifications.
2006 – 2012 Co-founder of RubyMine. Also participated in several other JetBrains projects, incl. IntelliJ IDEA and TeamCity.
2005 – 2006 Developer at the Apache Harmony.
2005 – 2008 Participated in various projects related to Domain-Specific Languages and Visual Modeling.
Professional Activity
Participant of numerous Ruby on Rails conferences.
Publications
SPAN and JBR: analysis and visualization toolkit for peak calling
August 2021
Oleg Shpynov , Roman Chernyatchik, Petr Tsurinov, Maxim Artyomov
Semi-supervised peak calling with SPAN and JBR Genome Browser
May 2021
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Petr Tsurinov, Maxim N Artyomov
Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome
November 2020
Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov
Epigenetic aging of classical monocytes from healthy individuals
May 2020
Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov
GENOMIC DATA ACCESS SERVICE
2019
Kalinin Vladislav Il'ich, Cherniatchik Roman Igorevich
POSTER: Semi-supervised solution for robust peak calling of Low Input ChIP-Seq
September 2018
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov
POSTER: Semi-supervised solution for peak calling
July 2018
Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov