Biography

Oleg leads bioinfomatics group at JetBrains Research laboratory. Works in the laboratory since 2013.

In 2008 he graduated cum laude from the Mathematics and Mechanics Faculty of the St. Petersburg State University. In 2008-2010 he was a Ph.D. student in SPbSU, faculty of mathematics and mechanics, system programming department. Graduated from Bioinformatics Institute in 2012, where he studied Molecular Biology and Bioinformatics.

He was developing major JetBrains products: flagship tool IntellIJ IDEA, PyCharm, etc. Creator of the Rubymine Integrated Development Environment for Ruby programming language. His main focus was in the analysis of source code in programming languages, starting from lexical analysis to advanced type system development and code verifications.

More information is available on the LinkedIn profile.

Professional Activity

  • Semi-supervised solution for robust peak calling of Low Input ChIP-Seq, a poster at ECCB 2018
  • Semi-supervised peak calling solution, a poster at Biata 2018: The Second Annual Scientific Conference, from algorithms to applications
  • Multi-omics dissection of Healthy Human Aging Focusing on CD14+/CD16- Monocytes, a poster at Keystone Symposia 2018: Aging, Inflammation and Immunity
  • Pipeline for epigenetic profiling of multiple histone marks in aging of monocytes, a poster at Immunology Program Retreat at Washington University School of Medicine, 2016
  • Machine Learning and Intelligence School, Microsoft Research, 2015
  • Yandex school of Data Analysis Conference, Yandex, 2014
  • Participated in various conferences on Ruby On Rails as a company representative and a speaker.

Academic Advising

2 master dissertations were successfully defended under Oleg's supervision.

Projects

  • Automated Ishikawa Fishbone Diagram construction for epigenetics data
  • Semisupervised Peak Analyzer
  • JBR - genome browser with peak calling functionality, multiple locations mode, and more
  • Main research project — aging project in collaboration with Artyomov's Lab.
  • CMeth Completed
    CMeth is a tool for analysing and comparing replicated WGBS data
  • ChipQuery Completed
    ChipQuery - public epigenomics databases search and analysis

Publications