Исследовательская группа

BioLabs

Публикации

Automatic generation of reviews of scientific papers

December 2020

Anna Nikiforovskaya, Nikolai Kapralov, Anna Vlasova, Oleg Shpynov, Aleksei Shpilman

ICMLA2020

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Comprehensive Profiling of an Aging Immune System Reveals Clonal GZMK+ CD8+ T Cells as Conserved Hallmark of Inflammaging

December 2020

Denis A. Mogilenko, Oleg Shpynov, Prabhakar Sairam Andhey, Laura Arthur, Amanda Swain, Ekaterina Esaulova, Simone Brioschi, Irina Shchukina, Martina Kerndl, Monika Bambouskova, Zhangting Yao, Anwesha Laha, Konstantin Zaitsev, Samantha Burdess, Susan Gillfilan, Sheila A. Stewart, Marco Colonna, Maxim N.Artyomov

Immunity

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Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome

November 2020

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz & Maxim N. Artyomov

Nature Aging

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Epigenetic aging of classical monocytes from healthy individuals

May 2020

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A. Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov, Konstantin Zaitsev, Sviatoslav Sidorov, Christina Camell, Monika Bambouskova, Laura Arthur, Amanda Swain, Alexandra Panteleeva, Aleksei Dievskii, Evgeny Kurbatsky, Petr Tsurinov, Roman Chernyatchik, Vishwa Deep Dixit, Marko Jovanovic, Sheila A. Stewart, Mark J. Daly, Sergey Dmitriev, Eugene M. Oltz, Maxim N. Artyomov

bioRxiv preprint

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Bioinformatics Institute 2018/19 project abstracts

June 2019

O. Shpynov, A. Dievskii, P. Tsurinov, et al

Saint-Petersburg, ISBN 978-5-6043094-2-1

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GENOMIC DATA ACCESS SERVICE

2019

Kalinin Vladislav Il'ich, Cherniatchik Roman Igorevich

ПРОЦЕССЫ УПРАВЛЕНИЯ И УСТОЙЧИВОСТЬ

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POSTER: Semi-supervised solution for robust peak calling of Low Input ChIP-Seq

September 2018

Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov and Maxim Artyomov

Proceedings of the 17th European conference on computational biology

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POSTER: Semi-supervised solution for peak calling

July 2018

Oleg Shpynov, Aleksei Dievskii, Roman Chernyatchik, Evgeny Kurbatsky, Petr Tsurinov, Maxim N. Artyomov

Proceedings of Biata2018 Bioinformatics: from algorithms to applications

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Bhlhe40 is an essential repressor of IL-10 during Mycobacterium tuberculosis infection

May 2018

Jeremy P. Huynh, Chih-Chung Lin, Jacqueline M. Kimmey, Nicholas N. Jarjour, Elizabeth A. Schwarzkopf, Tara R. Bradstreet, Irina Shchukina, Oleg Shpynov, Casey T. Weaver, Reshma Taneja, Maxim N. Artyomov, Brian T. Edelson, Christina L. Stallings

Journal of Experimental Medicine

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POSTER: Systems Level Characterization of the Epigenomic Changes During Healthy Aging in the Human Blood Monocyte

October 2016

Bagaitkar Juhi, Bambouskova Monica, Oltz Eugene, Porter Sofia, Collins Patrick, Shpynov Oleg, German Demidov, Konstantin Zaytsev

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POSTER: Detecting differential histone modification sites from ChIP-seq data via ranking

November 2014

Evgenii Kurbatckii

Proceedings of the 14th European conference on computational biology

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POSTER: A switching hidden Markov model for bisulfite sequencing

November 2014

Sergei Lebedev, Dmitry Groshev

Proceedings of the 14th European conference on computational biology

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